Divergence times among metazoan phyla based on sequence data

        Wray et al. (1996) Science 274: 568-573                             

Incongruent evolution of larval and adult morphology in sea urchins

        Wray (1996) Sys. Biol. 45: 308-322 

PPE: simulation of de novo transcription factor binding site evolution

        Stone and Wray (2001) Mol. Biol. Evol. 18: 1765-1770

CGR Motif: chaos game representation of N-mers genome-wide

       Hahn et al. (2003) Mol. Biol. Evol. 20: 901-906      

Abundant functional cis-regulatory variation in humans

        Rockman & Wray (2003) Mol. Biol. Evol. 19: 1991-2004

Detecting natural selection noncoding sequences genome-wide

        Haygood et al. (2007) Nature Genetics 39: 1140-1144

Olivier Fédrigo’s Python scripts

        various published and unpublished projects

FREE: fine-scale positional motif over-representation genome-wide

     Yokoyama et al. (2009) Nucl. Acids Res. 37: e92

Regression tree analysis of gene expression data

        Babbitt et al. (submitted)

= methods

= software

= datasets

= supplements

/wraylab/FileArchive/Resources/Wray1996matrix.html
Resources_files/CambrianInputFiles.zip
Resources_files/RockmanWraySuppMaterial.pdf
http://www.science.mcmaster.ca/biology/faculty/stonej/SOFTWARE/PPE/ppe.htm
http://www.duke.edu/~jes12/cgr/
Resources_files/free.1.4.tgz
Resources_files/FREEinstructions.pdf
http://www.duke.edu/~ofedrigo/HyPhyScripts/HyPhyScripts.html
http://www.duke.edu/~ofedrigo/PythonScripts/PythonScripts.html
/wraylab/RockmanWraySuppMaterial.pdf

RESOURCES

THE WRAY LAB